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e coli k 12 mg1655  (ATCC)


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    ATCC e coli k 12 mg1655
    E Coli K 12 Mg1655, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 637 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/e coli k 12 mg1655/product/ATCC
    Average 95 stars, based on 637 article reviews
    e coli k 12 mg1655 - by Bioz Stars, 2026-05
    95/100 stars

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    Cross-organism validation — prokaryotes. Horizontal bar chart comparing PLM (ESM2-650M + MLP, blue) vs BLAST-90K (amber) EC4 accuracy for 9 held-out prokaryotic proteomes at 50% sequence identity threshold. Organisms sorted by PLM−BLAST advantage (Δ pp annotated on right margin). Y-axis tick colors: dark grey = Bacteria, purple = Archaea. † <t>E.</t> <t>coli</t> <t>K-12</t> is partially in-distribution (∲20% of proteome in training set)—interpret with caution.
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    strain e coli k 12 mg1655  (ATCC)
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    Cross-organism validation — prokaryotes. Horizontal bar chart comparing PLM (ESM2-650M + MLP, blue) vs BLAST-90K (amber) EC4 accuracy for 9 held-out prokaryotic proteomes at 50% sequence identity threshold. Organisms sorted by PLM−BLAST advantage (Δ pp annotated on right margin). Y-axis tick colors: dark grey = Bacteria, purple = Archaea. † <t>E.</t> <t>coli</t> <t>K-12</t> is partially in-distribution (∲20% of proteome in training set)—interpret with caution.
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    Cross-organism validation — prokaryotes. Horizontal bar chart comparing PLM (ESM2-650M + MLP, blue) vs BLAST-90K (amber) EC4 accuracy for 9 held-out prokaryotic proteomes at 50% sequence identity threshold. Organisms sorted by PLM−BLAST advantage (Δ pp annotated on right margin). Y-axis tick colors: dark grey = Bacteria, purple = Archaea. † E. coli K-12 is partially in-distribution (∲20% of proteome in training set)—interpret with caution.

    Journal: bioRxiv

    Article Title: Protein Language Models Outperform BLAST for Evolutionarily Distant Enzymes: A Systematic Benchmark of EC Number Prediction

    doi: 10.64898/2026.03.31.715487

    Figure Lengend Snippet: Cross-organism validation — prokaryotes. Horizontal bar chart comparing PLM (ESM2-650M + MLP, blue) vs BLAST-90K (amber) EC4 accuracy for 9 held-out prokaryotic proteomes at 50% sequence identity threshold. Organisms sorted by PLM−BLAST advantage (Δ pp annotated on right margin). Y-axis tick colors: dark grey = Bacteria, purple = Archaea. † E. coli K-12 is partially in-distribution (∲20% of proteome in training set)—interpret with caution.

    Article Snippet: Note: E. coli K-12 (taxon 83333) is not fully held-out; approximately 20% of its proteome (∼1,303 proteins) is present in the 90K training set and results for this organism should be interpreted with caution.

    Techniques: Biomarker Discovery, Sequencing, Bacteria